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Databases/Tools
NAR database/Web Server and OBRC
Heatmapper2: web-enabled heat mapping made easy.
Nucleic Acids Res. 2025 Jul 07;53(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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Sample size calculator for reliability and validity evaluation: a
Shiny R
application.
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Qual Life Res. 2026 Sep 24;35(10)
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SimpleMicrobiome: An integrated web-based platform for streamlined microbiome data analysis and visualization.
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J Microbiol. 2026 Sep;64(9)
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A Multi-Site Dashboard for Evaluating HiGHmed Cardiovascular Sensor Data from Apple Watch.
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Stud Health Technol Inform. 2026 Sep 17;340
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RAPID: an interactive
R/Shiny
platform for end-to-end 16S rRNA and ITS amplicon sequence analysis using DADA2.
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Bioinformatics. 2026 Aug 31;42(9)
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Open-Source
R Shiny
Dashboard (Global Burden of Disease Analysis Suite) for Multimethod Burden of Disease Research: Development and Evaluation Study.
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JMIR Med Inform. 2026 Sep 11;14
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ExchangeXplorer: an
R/Shiny
application for processing and visualization of LC-HDX-MS data in metabolomics, lipidomics, and exposomics.
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Anal Chim Acta. 2026 Nov 01;1421
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Standardized microhaplotype databases and frameworks for assessing and mining crop genetic diversity.
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Theor Appl Genet. 2026 Aug 25;139(9)
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ShineMD: an automated pure-R platform with a graphical user interface for integrated analysis of AMBER molecular dynamics trajectories.
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Comput Biol Chem. 2026 Dec;125
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A machine learning approach to identify key epigenetic transcripts for ageing research in human blood (Epitage).
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Biogerontology. 2026 Jul 22;27(4)
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Integrating Clinical Classifications Software Refined, Process Indicators, and Geographic Information System Mapping to Inform Population Health Management: Development of an Interactive Dashboard.
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JMIR Med Inform. 2026 Jul 15;14
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