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Databases/Tools
NAR database/Web Server and OBRC
Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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Extensions of Heterogeneity in Integration and Prediction (HIP) With
R Shiny
Application.
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Journal:
Stat Med. 2025 Apr;44(8-9)
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MetaDAVis: An
R shiny
application for metagenomic data analysis and visualization.
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PLoS One. 2025;20(4)
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CancerTrialMatch: a computational resource for the management of biomarker-based clinical trials at a community cancer center.
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Bioinformatics. 2025 Mar 29;41(4)
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ProToDeviseR: an automated protein topology scheme generator.
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BMC Bioinformatics. 2025 Mar 03;26(1)
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TCGEx: a powerful visual interface for exploring and analyzing cancer gene expression data.
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EMBO Rep. 2025 Apr;26(7)
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GlycoDash: automated, visually assisted curation of glycoproteomics datasets for large sample numbers.
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Anal Bioanal Chem. 2025 Apr;417(10)
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Closing the gap while standing still: clinimetric properties of a low-cost balance platform and a user-friendly app for posturography.
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PeerJ. 2025;13
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CFO: Calibration-Free Odds Bayesian Designs for Dose Finding in Clinical Trials.
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JCO Clin Cancer Inform. 2025 Feb;9
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A computational tool to infer enzyme activity using post-translational modification profiling data.
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Commun Biol. 2025 Jan 21;8(1)
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Sherlock-Genome: an
R Shiny
application for genomic analysis and visualization.
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Journal:
BMC Genomics. 2025 Jan 16;26(1)
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