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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. ScRDAVis: An R shiny application for single-cell transcriptome data analysis and visualization.
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    Journal: PLoS Comput Biol. 2025 Nov;21(11)
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  2. Z-GENIE: a user-friendly R/Shiny resource for predicting Z-DNA forming regions in DNA.
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    Journal: BMC Genomics. 2025 Oct 27;26(1)
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  3. JUMPshiny: A User-Friendly Platform for Comprehensive Analysis and Visualization of Quantitative Proteomics Data.
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    Journal: Proteomics. 2025 Oct;25(20)
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  4. ShinyDegSEM: an interactive application for pathway perturbation analysis in gene expression studies via structural equation modeling.
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    Journal: PeerJ. 2025;13
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  5. BestopCloud: an integrated one-stop solution for single-cell RNA sequencing data analysis.
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    Journal: BMC Genomics. 2025 Oct 09;26(1)
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  6. BreastSubtypeR: a unified R/Bioconductor package for intrinsic molecular subtyping in breast cancer research.
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    Journal: NAR Genom Bioinform. 2025 Dec;7(4)
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  7. From Numbers to Insights: Developing a Visual Cohort Explorer for Feasibility Requests.
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    Journal: Stud Health Technol Inform. 2025 Sep 03;331
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  8. surveydown: An open-source, markdown-based platform for programmable and reproducible surveys.
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    Journal: PLoS One. 2025;20(8)
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  9. Clinical risk assessment of serum creatinine abnormalities during vancomycin therapy: a retrospective study using machine learning models.
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    Journal: Int J Clin Pharm. 2025 Dec;47(6)
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  10. Screening, Validation, and Machine Learning-Based Evaluation of Serum Protein Biomarkers for Esophageal Squamous Cell Carcinoma Based on Single-Cell Subtype-Specific Genes.
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    Journal: J Proteome Res. 2025 Sep 05;24(9)
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