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Databases/Tools
NAR database/Web Server and OBRC
Heatmapper2: web-enabled heat mapping made easy.
Nucleic Acids Res. 2025 Jul 07;53(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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The BIOPREVENT machine-learning algorithm predicts chronic graft-versus-host disease and mortality risk using posttransplant biomarkers.
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J Clin Invest. 2026 Feb 16;136(4)
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ERSAtool: A User-Friendly
R/Shiny
Comprehensive Transcriptomic Analysis Interface Suitable for Education.
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Genes Cells. 2025 Sep;30(5)
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QuAPPro: an
R shiny
app for quantification and alignment of polysome profiles.
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BMC Bioinformatics. 2026 Jan 22;27(1)
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MethylModes: computationally efficient detection of multimodal distributions in DNA methylation data.
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Bioinformatics. 2026 Jan 03;42(2)
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iModMix: integrative module analysis for multi-omics data.
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Bioinformatics. 2026 Feb 03;42(2)
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Nowcast-It: A Practical Toolbox for Real-Time Adjustment of Reporting Delays in Epidemic Surveillance.
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Viruses. 2025 Dec 10;17(12)
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Artificial Intelligence-Enhanced Multi-Algorithm
R Shiny
Application for Predictive Modeling and Analytics: Case Study of Alzheimer Disease Diagnostics.
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JMIR Aging. 2025 Dec 30;8
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GS4PB: An
R Shiny
application to facilitate a genomic selection pipeline for plant breeding.
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Plant Genome. 2025 Dec;18(4)
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AquaCropPlotter: A Shiny app for visualizing and analyzing AquaCrop simulation results.
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PLoS One. 2025;20(12)
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Nine-year risk stratification and prediction of Helicobacter pylori infection using Group-Based Trajectory Modeling and machine learning in 35,206 adults.
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Front Public Health. 2025;13
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