NAR database/Web Server and OBRC

• The PROSITE database for protein families, domains, and sites.
  Nucleic Acids Res. 2026 Jan 06;54(D1)
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• WashU Epigenome Browser update 2025.
  Nucleic Acids Res. 2025 Jul 07;53(W1)
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• dbAMP 3.0: updated resource of antimicrobial activity and structural annotation of peptides in the post-pandemic era.
  Nucleic Acids Res. 2025 Jan 06;53(D1)
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• A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort.
  Nucleic Acids Res. 2024 Jan 05;52(D1)
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• EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments.
  Nucleic Acids Res. 2024 Jan 05;52(D1)
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COV2Var, a function annotation database of SARS-CoV-2 genetic variation.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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The IUPHAR/BPS Guide to PHARMACOLOGY in 2024.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands.
Nucleic Acids Res. 2023 Jul 05;51(W1)
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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The UCSC Genome Browser database: 2023 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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NPInter v5.0: ncRNA interaction database in a new era.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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GenBank 2023 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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tatDB: a database of Ago1-mediated targets of transfer RNA fragments.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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LitCovid in 2022: an information resource for the COVID-19 literature.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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BioUML-towards a universal research platform.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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WashU Epigenome Browser update 2022.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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Search and sequence analysis tools services from EMBL-EBI in 2022.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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The 2022 Nucleic Acids Research database issue and the online molecular biology database collection.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The European Bioinformatics Institute (EMBL-EBI) in 2021.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The reactome pathway knowledgebase 2022.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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DNA Data Bank of Japan (DDBJ) update report 2021.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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BioSamples database: FAIRer samples metadata to accelerate research data management.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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HumanNet v3: an improved database of human gene networks for disease research.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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MVIP: multi-omics portal of viral infection.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The IUPHAR/BPS guide to PHARMACOLOGY in 2022: curating pharmacology for COVID-19, malaria and antibacterials.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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ESC: a comprehensive resource for SARS-CoV-2 immune escape variants.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Aviator: a web service for monitoring the availability of web services.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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LitSuggest: a web-based system for literature recommendation and curation using machine learning.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GENCODE 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CATH: increased structural coverage of functional space.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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UniProt: the universal protein knowledgebase in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The UCSC Genome Browser database: 2021 update.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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WikiPathways: connecting communities.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GenBank.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PROMISCUOUS 2.0: a resource for drug-repositioning.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Europe PMC in 2020.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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LitCovid: an open database of COVID-19 literature.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PubChem in 2021: new data content and improved web interfaces.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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DrugCentral 2021 supports drug discovery and repositioning.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Ensembl 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ADPriboDB 2.0: an updated database of ADP-ribosylated proteins.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Pfam: The protein families database in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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RASP: an atlas of transcriptome-wide RNA secondary structure probing data.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ViruSurf: an integrated database to investigate viral sequences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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DockCoV2: a drug database against SARS-CoV-2.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CoV3D: a database of high resolution coronavirus protein structures.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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