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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. SEQUIN is an R/Shiny framework for rapid and reproducible analysis of RNA-seq data.
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    Journal: Cell Rep Methods. 2023 Mar 27;3(3)
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  2. veRification: an R Shiny application for laboratory method verification and validation.
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    Journal: Clin Chem Lab Med. 2023 Sep 26;61(10)
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  3. Software Application Profile: The daggle app-a tool to support learning and teaching the graphical rules of selecting adjustment variables using directed acyclic graphs.
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    Journal: Int J Epidemiol. 2023 Oct 05;52(5)
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  4. FungiExpresZ: an intuitive package for fungal gene expression data analysis, visualization and discovery.
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    Journal: Brief Bioinform. 2023 Mar 19;24(2)
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  5. RNASequest: An End-to-End Reproducible RNAseq Data Analysis and Publishing Framework.
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    Journal: J Mol Biol. 2023 Jul 15;435(14)
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  6. Degenerate Beta autoregressive model for proportion time-series with zeros or ones: An application to antimicrobial resistance rate using R shiny app.
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    Journal: Front Public Health. 2022;10
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  7. Costs and Benefits of Popular P-Value Correction Methods in Three Models of Quantitative Omic Experiments.
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    Journal: Anal Chem. 2023 Feb 07;95(5)
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  8. Semantic wikis as flexible database interfaces for biomedical applications.
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    Journal: Sci Rep. 2023 Jan 19;13(1)
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  9. MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.
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    Journal: J Proteome Res. 2023 Feb 03;22(2)
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  10. BASIN: A Semi-automatic Workflow, with Machine Learning Segmentation, for Objective Statistical Analysis of Biomedical and Biofilm Image Datasets.
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    Journal: J Mol Biol. 2023 Jan 30;435(2)
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