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Databases/Tools
NAR database/Web Server and OBRC
Heatmapper2: web-enabled heat mapping made easy.
Nucleic Acids Res. 2025 Jul 07;53(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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TRIP - T cell receptor/immunoglobulin profiler.
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BMC Bioinformatics. 2020 Sep 29;21(1)
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Eatomics: Shiny Exploration of Quantitative Proteomics Data.
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J Proteome Res. 2021 Jan 01;20(1)
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GMIEC: a shiny application for the identification of gene-targeted drugs for precision medicine.
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BMC Genomics. 2020 Sep 10;21(1)
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Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets.
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Elife. 2020 Sep 07;9
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IPDmada: An
R Shiny
tool for analyzing and visualizing individual patient data meta-analyses of diagnostic test accuracy.
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Res Synth Methods. 2021 Jan;12(1)
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Interactive Web-based Data Visualization and Analysis Tool for Synthetizing on-farm Research Networks Data.
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Res Synth Methods. 2021 Jan;12(1)
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ShAn: An easy-to-use tool for interactive and integrated variant annotation.
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PLoS One. 2020;15(7)
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SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19.
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BMC Res Notes. 2020 Jun 16;13(1)
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Converting networks to predictive logic models from perturbation signalling data with CellNOpt.
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Bioinformatics. 2020 Aug 15;36(16)
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SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat.
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Gigascience. 2020 Jun 01;9(6)
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