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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. AquaCropPlotter: A Shiny app for visualizing and analyzing AquaCrop simulation results.
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    Journal: PLoS One. 2025;20(12)
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  2. Nine-year risk stratification and prediction of Helicobacter pylori infection using Group-Based Trajectory Modeling and machine learning in 35,206 adults.
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    Journal: Front Public Health. 2025;13
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  3. ScRDAVis: An R shiny application for single-cell transcriptome data analysis and visualization.
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    Journal: PLoS Comput Biol. 2025 Nov;21(11)
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  4. Z-GENIE: a user-friendly R/Shiny resource for predicting Z-DNA forming regions in DNA.
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    Journal: BMC Genomics. 2025 Oct 27;26(1)
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  5. JUMPshiny: A User-Friendly Platform for Comprehensive Analysis and Visualization of Quantitative Proteomics Data.
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    Journal: Proteomics. 2025 Oct;25(20)
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  6. CAT-GxD: Centralized access to gene expression datasets.
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    Journal: Anaerobe. 2025 Dec;96
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  7. ShinyDegSEM: an interactive application for pathway perturbation analysis in gene expression studies via structural equation modeling.
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    Journal: PeerJ. 2025;13
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  8. BestopCloud: an integrated one-stop solution for single-cell RNA sequencing data analysis.
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    Journal: BMC Genomics. 2025 Oct 09;26(1)
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  9. BreastSubtypeR: a unified R/Bioconductor package for intrinsic molecular subtyping in breast cancer research.
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    Journal: NAR Genom Bioinform. 2025 Dec;7(4)
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  10. Protocol to detect dilution cycles in chemostat experiments and estimate growth rate slopes with linear modeling with R software chemostat_regression.
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    Journal: STAR Protoc. 2025 Dec 19;6(4)
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