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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. Sherlock-Genome: an R Shiny application for genomic analysis and visualization.
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    Journal: BMC Genomics. 2025 Jan 16;26(1)
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  2. Application of machine learning in depression risk prediction for connective tissue diseases.
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    Journal: Sci Rep. 2025 Jan 11;15(1)
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  3. CsMPDB 1.0: An interactive web application for visualizing and exploring the microRNAs and phasiRNAs of tea plant (Camellia sinensis var. sinensis 'Shuchazao').
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    Journal: Int J Biol Macromol. 2025 Mar;293
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  4. CelEst: a unified gene regulatory network for estimating transcription factor activities in C. elegans.
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    Journal: Genetics. 2025 Mar 17;229(3)
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  5. Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond.
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    Journal: BMC Bioinformatics. 2024 Dec 04;25(1)
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  6. PhageGE: an interactive web platform for exploratory analysis and visualization of bacteriophage genomes.
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    Journal: Gigascience. 2024 Jan 02;13
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  7. PUPAID: A R + ImageJ pipeline for thorough and semi-automated processing and analysis of multi-channel immunofluorescence data.
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    Journal: PLoS One. 2024;19(9)
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  8. GeneRaMeN enables integration, comparison, and meta-analysis of multiple ranked gene lists to identify consensus, unique, and correlated genes.
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    Journal: Brief Bioinform. 2024 Jul 25;25(5)
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  9. MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis.
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    Journal: J Integr Plant Biol. 2024 Nov;66(11)
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  10. Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst.
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    Journal: J Proteome Res. 2024 Oct 04;23(10)
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