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  1. DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence.
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    Journal: Bioinformatics. 2024 Dec 26;41(1)
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  2. Improved prediction of post-translational modification crosstalk within proteins using DeepPCT.
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    Journal: Bioinformatics. 2024 Nov 28;40(12)
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  3. Predicting multiple conformations of ligand binding sites in proteins suggests that AlphaFold2 may remember too much.
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    Journal: Proc Natl Acad Sci U S A. 2024 Nov 26;121(48)
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  4. Influence of Stereochemistry in a Local Approach for Calculating Protein Conformations.
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    Journal: J Chem Inf Model. 2024 Dec 09;64(23)
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  5. STRPsearch: fast detection of structured tandem repeat proteins.
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    Journal: Bioinformatics. 2024 Nov 28;40(12)
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  6. Protein Structure Prediction with High Degrees of Freedom in a Gate-Based Quantum Computer.
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    Journal: J Chem Theory Comput. 2024 Nov 26;20(22)
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  7. Challenge for Deep Learning: Protein Structure Prediction of Ligand-Induced Conformational Changes at Allosteric and Orthosteric Sites.
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    Journal: J Chem Inf Model. 2024 Nov 25;64(22)
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  8. Restoring protein glycosylation with GlycoShape.
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    Journal: Nat Methods. 2024 Nov;21(11)
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  9. CoNglyPred: Accurate Prediction of N-Linked Glycosylation Sites Using ESM-2 and Structural Features With Graph Network and Co-Attention.
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    Journal: Proteomics. 2025 Mar;25(5-6)
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  10. Protein interactions in human pathogens revealed through deep learning.
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    Journal: Nat Microbiol. 2024 Oct;9(10)
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