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  1. Protein model quality assessment using rotation-equivariant transformations on point clouds.
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    Journal: Proteins. 2023 Aug;91(8)
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  2. Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer.
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    Journal: Bioinformatics. 2023 May 04;39(5)
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  3. Do "Newly Born" orphan proteins resemble "Never Born" proteins? A study using three deep learning algorithms.
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    Journal: Proteins. 2023 Aug;91(8)
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  4. A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data.
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    Journal: Proteomics. 2023 Sep;23(17)
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  5. Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model.
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    Journal: Bioinformatics. 2023 Apr 03;39(4)
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  6. Pareto Dominance Archive and Coordinated Selection Strategy-Based Many-Objective Optimizer for Protein Structure Prediction.
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    Journal: IEEE/ACM Trans Comput Biol Bioinform. 2023;20(3)
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  7. SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances.
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    Journal: IEEE/ACM Trans Comput Biol Bioinform. 2023;20(6)
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  8. TemPred: A Novel Protein Template Search Engine to Improve Protein Structure Prediction.
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    Journal: IEEE/ACM Trans Comput Biol Bioinform. 2023;20(3)
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  9. Specificities of Modeling of Membrane Proteins Using Multi-Template Homology Modeling.
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    Journal: Methods Mol Biol. 2023;2627
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  10. Contact-Assisted Threading in Low-Homology Protein Modeling.
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    Journal: Methods Mol Biol. 2023;2627
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