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  1. PhosAF: An integrated deep learning architecture for predicting protein phosphorylation sites with AlphaFold2 predicted structures.
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    Journal: Anal Biochem. 2024 Jul;690
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  2. Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms.
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    Journal: Front Immunol. 2024;15
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  3. Generalized biomolecular modeling and design with RoseTTAFold All-Atom.
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    Journal: Science. 2024 Apr 19;384(6693)
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  4. Protein structure accuracy estimation using geometry-complete perceptron networks.
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    Journal: Protein Sci. 2024 Mar;33(3)
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  5. Geometry-complete perceptron networks for 3D molecular graphs.
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    Journal: Bioinformatics. 2024 Feb 01;40(2)
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  6. Making Use of Averaging Methods in MODELLER for Protein Structure Prediction.
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    Journal: Int J Mol Sci. 2024 Jan 31;25(3)
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  7. CombFold: predicting structures of large protein assemblies using a combinatorial assembly algorithm and AlphaFold2.
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    Journal: Nat Methods. 2024 Mar;21(3)
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  8. Utilizing the scale-invariant feature transform algorithm to align distance matrices facilitates systematic protein structure comparison.
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    Journal: Bioinformatics. 2024 Mar 04;40(3)
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  9. DBPboost:A method of classification of DNA-binding proteins based on improved differential evolution algorithm and feature extraction.
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    Journal: Methods. 2024 Mar;223
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  10. Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm.
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    Journal: Interdiscip Sci. 2024 Sep;16(3)
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