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  1. Illuminating the "Twilight Zone": Advances in Difficult Protein Modeling.
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    Journal: Methods Mol Biol. 2023;2627
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  2. Protein structure prediction with in-cell photo-crosslinking mass spectrometry and deep learning.
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    Journal: Nat Biotechnol. 2023 Dec;41(12)
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  3. Inter-domain distance prediction based on deep learning for domain assembly.
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    Journal: Brief Bioinform. 2023 May 19;24(3)
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  4. Are Deep Learning Structural Models Sufficiently Accurate for Virtual Screening? Application of Docking Algorithms to AlphaFold2 Predicted Structures.
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    Journal: J Chem Inf Model. 2023 Mar 27;63(6)
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  5. Real-to-bin conversion for protein residue distances.
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    Journal: Comput Biol Chem. 2023 Jun;104
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  6. ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.
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    Journal: J Mol Biol. 2023 Jul 15;435(14)
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  7. Protein structure prediction using the evolutionary algorithm USPEX.
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    Journal: Proteins. 2023 Jul;91(7)
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  8. Challenges in antibody structure prediction.
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    Journal: MAbs. 2023;15(1)
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  9. RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.
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    Journal: J Mol Biol. 2023 Jul 15;435(14)
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  10. High-accuracy protein model quality assessment using attention graph neural networks.
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    Journal: Brief Bioinform. 2023 Mar 19;24(2)
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