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  1. Structural analogue-based protein structure domain assembly assisted by deep learning.
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    Journal: Bioinformatics. 2022 Sep 30;38(19)
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  2. A stacked meta-ensemble for protein inter-residue distance prediction.
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    Journal: Comput Biol Med. 2022 Sep;148
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  3. Sequence-assignment validation in cryo-EM models with checkMySequence.
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    Journal: Acta Crystallogr D Struct Biol. 2022 Jul 01;78(Pt 7)
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  4. DeepTracer-ID: De novo protein identification from cryo-EM maps.
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    Journal: Biophys J. 2022 Aug 02;121(15)
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  5. AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein.
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    Journal: Protein Sci. 2022 Jul;31(7)
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  6. Protein structure prediction improves the quality of amino-acid sequence alignment.
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    Journal: Proteins. 2022 Dec;90(12)
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  7. Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling.
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    Journal: Bioinformatics. 2022 Aug 10;38(16)
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  8. CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields.
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    Journal: Molecules. 2022 Jun 09;27(12)
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  9. Automated Protein Secondary Structure Assignment from Cα Positions Using Neural Networks.
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    Journal: Biomolecules. 2022 Jun 17;12(6)
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  10. Learning Proteome Domain Folding Using LSTMs in an Empirical Kernel Space.
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    Journal: J Mol Biol. 2022 Aug 15;434(15)
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