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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets.
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    Journal: Syst Biol. 2019 May 01;68(3)
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  2. Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17.
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    Journal: J Proteome Res. 2018 Dec 07;17(12)
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  3. TopScore: Using Deep Neural Networks and Large Diverse Data Sets for Accurate Protein Model Quality Assessment.
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    Journal: J Chem Theory Comput. 2018 Nov 13;14(11)
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  4. Predicting improved protein conformations with a temporal deep recurrent neural network.
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    Journal: PLoS One. 2018;13(9)
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  5. Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning.
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    Journal: J Chem Inf Model. 2018 Sep 24;58(9)
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  6. A Comparative Study on Single and Multiple Point Crossovers in a Genetic Algorithm for Coarse Protein Modeling.
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    Journal: Crit Rev Biomed Eng. 2018;46(2)
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  7. New Deep Learning Methods for Protein Loop Modeling.
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    Journal: IEEE/ACM Trans Comput Biol Bioinform. 2019;16(2)
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  8. An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
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    Journal: Sci Rep. 2018 Jul 02;8(1)
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  9. Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.
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    Journal: J Mol Graph Model. 2018 Aug;83
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  10. RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.
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    Journal: BMC Bioinformatics. 2018 May 08;19(Suppl 4)
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