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NAR database/Web Server and OBRC

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  1. Template-based protein structure modeling using TASSER(VMT.).
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    Journal: Proteins. 2012 Feb;80(2)
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  2. PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.
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    Journal: Bioinformatics. 2012 Jan 15;28(2)
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  3. CONTSOR--a new knowledge-based fold recognition potential, based on side chain orientation and contacts between residue terminal groups.
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    Journal: Protein Sci. 2012 Jan;21(1)
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  4. Clustering 100,000 protein structure decoys in minutes.
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    Journal: IEEE/ACM Trans Comput Biol Bioinform. 2012;9(3)
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  5. Predicting residue-residue contacts using random forest models.
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    Journal: Bioinformatics. 2011 Dec 15;27(24)
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  6. HHfrag: HMM-based fragment detection using HHpred.
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    Journal: Bioinformatics. 2011 Nov 15;27(22)
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  7. LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates.
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    Journal: BMC Bioinformatics. 2011 Sep 15;12
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  8. RSARF: prediction of residue solvent accessibility from protein sequence using random forest method.
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    Journal: Protein Pept Lett. 2012 Jan;19(1)
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  9. Rational design of temperature-sensitive alleles using computational structure prediction.
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    Journal: PLoS One. 2011;6(9)
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  10. PackHelix: a tool for helix-sheet packing during protein structure prediction.
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    Journal: Proteins. 2011 Oct;79(10)
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