Results 1-10 of about 359
- Rigor and Reproducibility of Spatial Transcriptomics Performed on Clinically Sourced Human Tissues. new window
Date: 2025-04-29 Authors: Smith KD, MacDonald JW, Li X, Beirne E, Stewart G, Bammler TK, Akilesh S. Journal: Laboratory investigation; a journal of technical methods and pathology - Formation of the human skeletal muscle can be achieved through xenotransplant of human stem or progenitor cells into mice. Human cells, such as those derived from human pluripotent stem cells (hPSCs), are dissociated from in vitro culture conditions
Date: (2025) Authors: Ben Clock , Michael Hicks Date: 2025-04-23 Authors: Luo Z, Schmitz RJ. Journal: STAR protocols - Integrating Tissue Microarray to GeoMx® Digital Spatial Profiler : SpatialTranscriptomics Assay with Bioinformatics Anal... new windowGenome-wide or high-plex gene expression is important to understand the organism, tissue, and cellular mechanism. From microarrays to next-generation sequencing (RNA-Seq) at the bulk level and then to the single cell level, gene expression studies
Date: (2025) Authors: Deshica Dechamma , Manju Moorthy , Vijayalakshmi Bhat , Gopalakrishna Ramaswamy Ref: Gene Expression Analysis Date: 2025-04-23 Authors: Wu H, Scanlon MJ. Journal: Cold Spring Harbor protocols - Homebuilt Imaging-Based SpatialTranscriptomics: Tertiary Lymphoid Structures as a Case Example new windowSpatialtranscriptomics methods provide insight into the cellular heterogeneity and spatial architecture of complex, multicellular systems. Combining molecular and spatial information provides important clues to study tissue architecture
Date: (2025) Authors: Thomas Defard , Auxence Desrentes , Charles Fouillade , Florian Mueller Ref: Tertiary Lymphoid Structures - A method infers tension from spatial transcriptomic data on single cells in tissue context.
Date: (2025) Authors: Alexandre Francou , Woonyung Hur , Anna-Katerina Hadjantonakis - Protocol for single-cell RNA sequencing and spatial transcriptomics of bladder Ewing sarcoma. new window
Date: 2025-03-10 Authors: Mao W, Zhang H, Ji J, Wu J, Chen M, Sun C. Journal: STAR protocols - Advances in spatial profiling technologies are providing insights into how molecular programs are influenced by local signaling and environmental cues. However, cell fate specification and tissue patterning involve the interplay of biochemical and
Date: (2025) Authors: Adrien Hallou , Ruiyang He , Benjamin D. Simons , Bianca Dumitrascu - OmniClust: A versatile clustering toolkit for single-cell and spatial transcriptomics data. new window
Date: 2025-03-06 Authors: Cui Y, Cui Y, Ding Y, Nakai K, Wei L, Le Y, Ye X, Sakurai T. Journal: Methods (San Diego, Calif.)