Results 81-90 of about 359
- Protocol for multispectral imaging on cryosections to map myeloid cell heterogeneity in its spatial context. new window
Date: 2023-09-23 Authors: Wieland EB, Kempen LJAP, Lu C, Donners MMPC, Biessen EAL, Goossens P. Journal: STAR protocols - Inferring pattern-driving intercellular flows from single-cell and spatialtranscriptomics new windowFrom single-cell RNA-sequencing (scRNA-seq) and spatialtranscriptomics (ST), one can extract high-dimensional gene expression patterns that can be described by intercellular communication networks or decoupled gene modules. These two descriptions
Date: (2024) Authors: Axel A. Almet , Yuan-Chen Tsai , Momoko Watanabe , Qing Nie - Protocol to combine brain sections from multiple mice into a single block for spatial transcriptomic analyses. new window
Date: 2023-09-23 Authors: Sei YJ, Chaumeil MM, Nakamura K. Journal: STAR protocols - Targeted spatial transcriptomic methods capture the topology of cell types and states in tissues at single-cell and subcellular resolution by measuring the expression of a predefined set of genes. The selection of an optimal set of probed genes is
Date: (2024) Authors: Louis B. Kuemmerle , Malte D. Luecken , Alexandra B. Firsova , Lisa Barros de Andrade e Sousa ... Fabian J. Theis - Protocol for profiling in vitro intratumor heterogeneity using spatially annotated single-cell sequencing. new window
Date: 2023-07-14 Authors: Smit MM, Feller KJ, You L, Chien MP. Journal: STAR protocols Date: (2024) - Protocol for the use of signal amplification by exchange reaction-fluorescence in situ hybridization on adult formalin-f... new window
Date: 2023-06-09 Authors: Warren R, Shaik A, Teubner L, Lyu H, De Langhe S. Journal: STAR protocols - Spatial clustering, which shares an analogy with single-cell clustering, has expanded the scope of tissue physiology studies from cell-centroid to structure-centroid with spatially resolved transcriptomics (SRT) data. Computational methods have
Date: (2024) Authors: Zhiyuan Yuan , Fangyuan Zhao , Senlin Lin , Yu Zhao ... Yi Zhao - Electrophysiological and morphological characterization of single neurons in intact human brain organoids. new window
Date: 2023-05-24 Authors: Landry CR, Yip MC, Zhou Y, Niu W, Wang Y, Yang B, Wen Z, Forest CR. Journal: Journal of neuroscience methods - Single-cell and spatialtranscriptomics illuminate complementary features of tissues. Computational integration can synergize these technologies to resolve cell types and transcriptomes in situ. However, online dissemination and exploration
Date: (2024) Authors: Tong Li , David Horsfall , Daniela Basurto-Lozada , Kenny Roberts ... Omer Ali Bayraktar