Results 121-130 of about 359
- DNA-PAINT is a super-resolution microscopy technique that involves targeting proteins of interest with antibodies that are linked to short DNA sequences called docking strands. Complementary imager strands are fluorescently tagged and bind
Date: (2024) Authors: Nina Vogt - Processing and cryopreservation of human ureter tissues for single-cell and spatial transcriptomics assays. new window
Date: 2022-11-12 Authors: Fink EE, Sona S, Lee BH, Ting AH. Journal: STAR protocols - Spatially resolved epigenome sequencing via Tn5 transposition and deterministic DNA barcoding in tissue new windowSpatial epigenetic mapping of tissues enables the study of gene regulation programs and cellular functions with the dependency on their local tissue environment. Here we outline a complete procedure for two spatial epigenomic profiling methods:
Date: (2024) Authors: Negin Farzad , Archibald Enninful , Shuozhen Bao , Di Zhang ... Rong Fan - An Unsupervised Deep Learning-Based Model Using Multiomics Data to Predict Prognosis of Patients with Stomach Adenocarci... new window
Date: 2022-10-27 Authors: Chen S, Zang Y, Xu B, Lu B, Ma R, Miao P, Chen B. Journal: Computational and mathematical methods in medicine - Cell segmentation and classification are critical tasks in spatial omics data analysis. Here we introduce CelloType, an end-to-end model designed for cell segmentation and classification for image-based spatial omics data. Unlike the traditional
Date: (2024) Authors: Minxing Pang , Tarun Kanti Roy , Xiaodong Wu , Kai Tan - Immuno-localization of definitive hematopoietic stem cells in the vascular niche of mouse fetal liver. new window
Date: 2022-10-12 Authors: Biswas A, Singh SK, Kartha GM, Khurana S. Journal: STAR protocols - The growing number of multi-omics studies demands clear conceptual workflows coupled with easy-to-use software tools to facilitate data analysis and interpretation. This protocol covers three key components involved in multi-omics analysis, including
Date: (2024) Authors: Jessica D. Ewald , Guangyan Zhou , Yao Lu , Jelena Kolic ... Jianguo Xia - Multiplex immunofluorescence-guided laser capture microdissection for spatial transcriptomics of metastatic melanoma tis... new window
Date: 2022-09-22 Authors: Martinek J, Wu TC, Sun L, Lin J, Kim KI, Marches F, Robson P, George J, Palucka K. Journal: STAR protocols - Analysis across a growing number of single-cell perturbation datasets is hampered by poor data interoperability. To facilitate development and benchmarking of computational methods, we collect a set of 44 publicly available single-cell
Date: (2024) Authors: Stefan Peidli , Tessa D. Green , Ciyue Shen , Torsten Gross ... Chris Sander - Laser Microdissection-Mediated Isolation of Butterfly Wing Tissue for Spatial Transcriptomics. new window
Date: 2022-08-11 Authors: Banerjee TD, Tian S, Monteiro A. Journal: Methods and protocols