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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. Machine learning based prediction by PlantCdMiner and experimental validation of cadmium-responsive genes in plants.
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    Journal: J Hazard Mater. 2025 Aug 15;494
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  2. New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application.
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    Journal: PLoS One. 2025;20(5)
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  3. Prediction of acute and chronic kidney diseases during the post-covid-19 pandemic with machine learning models: utilizing national electronic health records in the US.
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    Journal: EBioMedicine. 2025 May;115
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  4. Extensions of Heterogeneity in Integration and Prediction (HIP) With R Shiny Application.
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    Journal: Stat Med. 2025 Apr;44(8-9)
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  5. MetaDAVis: An R shiny application for metagenomic data analysis and visualization.
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    Journal: PLoS One. 2025;20(4)
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  6. CancerTrialMatch: a computational resource for the management of biomarker-based clinical trials at a community cancer center.
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    Journal: Bioinformatics. 2025 Mar 29;41(4)
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  7. shinybeez: A Shiny app for behavioral economic easy demand and discounting.
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    Journal: J Exp Anal Behav. 2025 Mar;123(2)
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  8. Polytect: an automatic clustering and labeling method for multicolor digital PCR data.
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    Journal: NAR Genom Bioinform. 2025 Mar;7(1)
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  9. ProToDeviseR: an automated protein topology scheme generator.
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    Journal: BMC Bioinformatics. 2025 Mar 03;26(1)
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  10. TCGEx: a powerful visual interface for exploring and analyzing cancer gene expression data.
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    Journal: EMBO Rep. 2025 Apr;26(7)
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