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182
Databases/Tools
NAR database/Web Server and OBRC
Heatmapper2: web-enabled heat mapping made easy.
Nucleic Acids Res. 2025 Jul 07;53(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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scViewer: An Interactive Single-Cell Gene Expression Visualization Tool.
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Cells. 2023 May 27;12(11)
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Sample size and power calculations for causal mediation analysis: A Tutorial and Shiny App.
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Behav Res Methods. 2024 Mar;56(3)
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SEQUIN is an
R/Shiny
framework for rapid and reproducible analysis of RNA-seq data.
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Cell Rep Methods. 2023 Mar 27;3(3)
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veRification: an
R Shiny
application for laboratory method verification and validation.
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Clin Chem Lab Med. 2023 Sep 26;61(10)
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Software Application Profile: The daggle app-a tool to support learning and teaching the graphical rules of selecting adjustment variables using directed acyclic graphs.
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Int J Epidemiol. 2023 Oct 05;52(5)
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FungiExpresZ: an intuitive package for fungal gene expression data analysis, visualization and discovery.
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Brief Bioinform. 2023 Mar 19;24(2)
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RNASequest: An End-to-End Reproducible RNAseq Data Analysis and Publishing Framework.
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J Mol Biol. 2023 Jul 15;435(14)
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Degenerate Beta autoregressive model for proportion time-series with zeros or ones: An application to antimicrobial resistance rate using
R shiny
app.
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Front Public Health. 2022;10
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Costs and Benefits of Popular P-Value Correction Methods in Three Models of Quantitative Omic Experiments.
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Anal Chem. 2023 Feb 07;95(5)
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Semantic wikis as flexible database interfaces for biomedical applications.
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Sci Rep. 2023 Jan 19;13(1)
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