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41
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182
Databases/Tools
NAR database/Web Server and OBRC
Heatmapper2: web-enabled heat mapping made easy.
Nucleic Acids Res. 2025 Jul 07;53(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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A model-informed clinical trial simulation tool with a graphical user interface for Duchenne muscular dystrophy.
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CPT Pharmacometrics Syst Pharmacol. 2025 Nov;14(11)
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PhageGE: an interactive web platform for exploratory analysis and visualization of bacteriophage genomes.
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Gigascience. 2024 Jan 02;13
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PUPAID: A R + ImageJ pipeline for thorough and semi-automated processing and analysis of multi-channel immunofluorescence data.
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PLoS One. 2024;19(9)
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GeneRaMeN enables integration, comparison, and meta-analysis of multiple ranked gene lists to identify consensus, unique, and correlated genes.
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Brief Bioinform. 2024 Jul 25;25(5)
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MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis.
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J Integr Plant Biol. 2024 Nov;66(11)
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Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst.
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J Proteome Res. 2024 Oct 04;23(10)
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DxGoals: A Software Tool for Determining and Analyzing Clinically Meaningful Classification Accuracy Goals for Diagnostic Tests.
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J Appl Lab Med. 2024 Sep 03;9(5)
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ESCCPred: a machine learning model for diagnostic prediction of early esophageal squamous cell carcinoma using autoantibody profiles.
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Br J Cancer. 2024 Sep;131(5)
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PROpwr: a
Shiny R
application to analyze patient-reported outcomes data and estimate power.
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J Biopharm Stat. 2025 Aug;35(5)
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CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using
R-Shiny
.
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BMC Bioinformatics. 2024 Apr 02;25(1)
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