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  • Databases/Tools

NAR database/Web Server and OBRC

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  1. KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data.
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    Journal: PLoS One. 2021;16(12)
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  2. Ten simple rules for creating a scientific web application.
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    Journal: PLoS Comput Biol. 2021 Dec;17(12)
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  3. SCHNAPPs - Single Cell sHiNy APPlication(s).
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    Journal: J Immunol Methods. 2021 Dec;499
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  4. spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data.
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    Journal: Bioinformatics. 2021 Dec 07;37(23)
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  5. Development of interactive biological web applications with R/Shiny.
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    Journal: Brief Bioinform. 2022 Jan 17;23(1)
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  6. autopsych: An R Shiny tool for the reproducible Rasch analysis, differential item functioning, equating, and examination of group effects.
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    Journal: PLoS One. 2021;16(10)
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  7. TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs.
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    Journal: Bioinformatics. 2022 Jan 03;38(2)
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  8. UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data.
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    Journal: Bioinformatics. 2022 Jan 03;38(2)
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  9. Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories.
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    Journal: Bioinformatics. 2021 Jul 12;37(Suppl_1)
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  10. EcTracker: Tracking and elucidating ectopic expression leveraging large-scale scRNA-seq studies.
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    Journal: Brief Bioinform. 2021 Nov 05;22(6)
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