Results 11-20 of about 900
- Various proteins interact with specific genome regions, playing crucial roles in gene regulation. ChromatinImmunoprecipitation (ChIP) is the most commonly used method to study protein-DNA interactions in vivo. By combining ChIP with high-throughpu
Date: (2025) Authors: Yixuan Fu , Sara Simonini Ref: Methods for Plant Nucleus and Chromatin Studies Date: 2025-01-26 Authors: Comendul A, Ruf-Zamojski F, Ford CT, Agarwal P, Zaslavsky E, Nudelman G, Hariharan M, Rubenstein A, Pincas H, Nair VD, Michaleas AM, Fremont-Smith PD, Ricke DO, Sealfon SC, Woods CW, Claypool KT, Jaimes R. Journal: STAR protocols - Chromatinimmunoprecipitation followed by deep sequencing (ChIP-seq) is widely used to probe the chromatin landscape of transcription factors, chromatin components, and associated proteins. Conventional ChIP normalization procedures robustly all
Date: (2025) Authors: Adrien Vidal , Lorenzo Concia , Martin Rougée , Clara Bourbousse , Fredy Barneche Ref: Methods for Plant Nucleus and Chromatin Studies Date: 2025-01-24 Authors: Wang X, Xie Q, Ke L, Gong Y, Li M. Journal: Journal of visualized experiments : JoVE - A Simple Method to Analyze Context- and Tissue-Specific Cis-Regulatory Modulations of Homeotic (HOX) Genes Using ChIP new windowHomeobox genes (HOX), the master regulators, deploy a unique set of target genes to coordinate and orchestrate the spatiotemporal development of an organism. HOX encoded transcriptional factors regulate the expression of target genes by binding to
Date: (2025) Authors: Usha Nagarajan , Shanmugasundaram Pakkiriswami Ref: HOX Genes - Protocol for transcriptomic and epigenomic analyses of tip-like endothelial cells using scRNA-seq and ChIP-seq. new window
Date: 2025-01-10 Authors: Funasaki S, Miyamura Y, Kamei S, Rahman A, Yamazaki M, Usuki S, Yasunaga K, Satou Y, Ohguchi H, Minami T. Journal: STAR protocols - Efficient In-house Coupling of Sample and Library Preparation for ChIP-Seq of Histone Modifications in Complex Plant Tis... new windowChIP-seq is a commonly used method to characterize chromatin-associated features on a genome-wide basis. A common set of steps for a ChIP-seq procedure prior to sequencing includes crosslinking, nuclei extraction, chromatin shearing,
Date: (2025) Authors: Jiaxin Long , Emily T. Johnson , Joe Ogas Ref: Histones Date: 2025-01-03 Authors: Zhang J, Tong S, Liang S, Li F, Zhang C, Ding N, Hao Y. Journal: Journal of visualized experiments : JoVE - Comparative Profiling of Regulatory Modules as a Tool for Identifying the Transcription Factor Network Linked to Leukemo... new windowThe dynamic gene expression program of hematopoiesis is controlled by a complex network of regulatory modules consisting of transcription factors, chromatin modifiers, and genomic organizers. Genetic abnormalities or changes in the levels of these
Date: (2025) Authors: Swetha Subramanian , Yutthaphong Phongbunchoo , Pierre Cauchy , Senthilkumar Ramamoorthy Ref: B-Cell Receptor Signaling Date: 2025-01-02 Authors: Du C, Volkan P. Journal: Cold Spring Harbor protocols