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Databases/Tools
NAR database/Web Server and OBRC
Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model.
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Bioinformatics. 2019 Nov 01;35(21)
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Testing two variances for superiority/non-inferiority and equivalence: Using the exhaustion algorithm for sample size allocation with cost.
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Br J Math Stat Psychol. 2020 May;73(2)
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RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data.
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BMC Genomics. 2019 Jun 06;20(Suppl 5)
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GScluster: network-weighted gene-set clustering analysis.
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BMC Genomics. 2019 May 09;20(1)
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scClustViz - Single-cell RNAseq cluster assessment and visualization.
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F1000Res. 2018;7
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Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus.
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Comput Biol Chem. 2019 Jun;80
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PlotsOfData-A web app for visualizing data together with their summaries.
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PLoS Biol. 2019 Mar;17(3)
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FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments.
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BMC Bioinformatics. 2019 Feb 15;20(1)
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Exploring drivers of gene expression in the Cancer Genome Atlas.
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Bioinformatics. 2019 Jan 01;35(1)
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RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data.
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BMC Genomics. 2018 Nov 08;19(1)
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