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Databases/Tools
NAR database/Web Server and OBRC
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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The UCSC Genome Browser database: 2023 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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NPInter v5.0: ncRNA interaction database in a new era.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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GenBank 2023 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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tatDB: a database of Ago1-mediated targets of transfer RNA fragments.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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LitCovid in 2022: an information resource for the COVID-19 literature.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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BioUML-towards a universal research platform.
Nucleic Acids Res. 2022 May 10;50(W1) [Epub ahead of print].
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WashU Epigenome Browser update 2022.
Nucleic Acids Res. 2022 Apr 12;50(W1) [Epub ahead of print].
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Search and sequence analysis tools services from EMBL-EBI in 2022.
Nucleic Acids Res. 2022 Apr 12;50(W1) [Epub ahead of print].
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The 2022 Nucleic Acids Research database issue and the online molecular biology database collection.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The European Bioinformatics Institute (EMBL-EBI) in 2021.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The reactome pathway knowledgebase 2022.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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DNA Data Bank of Japan (DDBJ) update report 2021.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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BioSamples database: FAIRer samples metadata to accelerate research data management.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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HumanNet v3: an improved database of human gene networks for disease research.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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MVIP: multi-omics portal of viral infection.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The IUPHAR/BPS guide to PHARMACOLOGY in 2022: curating pharmacology for COVID-19, malaria and antibacterials.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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ESC: a comprehensive resource for SARS-CoV-2 immune escape variants.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Aviator: a web service for monitoring the availability of web services.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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LitSuggest: a web-based system for literature recommendation and curation using machine learning.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GENCODE 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CATH: increased structural coverage of functional space.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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UniProt: the universal protein knowledgebase in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The UCSC Genome Browser database: 2021 update.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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WikiPathways: connecting communities.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GenBank.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PROMISCUOUS 2.0: a resource for drug-repositioning.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Europe PMC in 2020.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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LitCovid: an open database of COVID-19 literature.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PubChem in 2021: new data content and improved web interfaces.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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DrugCentral 2021 supports drug discovery and repositioning.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Ensembl 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ADPriboDB 2.0: an updated database of ADP-ribosylated proteins.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Pfam: The protein families database in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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RASP: an atlas of transcriptome-wide RNA secondary structure probing data.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ViruSurf: an integrated database to investigate viral sequences.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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DockCoV2: a drug database against SARS-CoV-2.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CoV3D: a database of high resolution coronavirus protein structures.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Find More Resources from PubMed Articles
DeepMPF: deep learning framework for predicting drug-target interactions based on multi-modal representation with meta-path semantic analysis.
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J Transl Med. 2023 Jan 25;21(1)
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In search of ethical pandemic technology.
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Indian J Med Ethics. 2023;VIII(1)
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Developing digital contact tracing tailored to haulage in East Africa to support
COVID-19
surveillance: a protocol.
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BMJ Open. 2022 Sep 02;12(9)
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Do artificial neural networks love sex? How the combination of artificial neural networks with evolutionary algorithms may help to identify gender influence in rheumatic diseases.
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Clin Exp Rheumatol. 2023 Jan;41(1)
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Subjective attitudes moderate the social connectedness in esports gaming during
COVID-19
pandemic: A cross-sectional study.
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Front Public Health. 2022;10
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Decision Method of Optimal Needle Insertion Angle for Dorsal Hand Intravenous Robot.
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Sensors (Basel). 2023 Jan 11;23(2)
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Research on the Application of Artificial Intelligence in Public Health Management: Leveraging Artificial Intelligence to Improve
COVID-19
CT Image Diagnosis.
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Int J Environ Res Public Health. 2023 Jan 09;20(2)
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CNGOD-An improved convolution neural network with grasshopper optimization for detection of
COVID-19
.
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Math Biosci Eng. 2022 Aug 26;19(12)
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A hybrid deep learning framework for air quality prediction with spatial autocorrelation during the
COVID-19
pandemic.
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Sci Rep. 2023 Jan 18;13(1)
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Pandemic disease detection through wireless communication using infrared image based on deep learning.
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Math Biosci Eng. 2023 Jan;20(1)
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