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Databases/Tools
NAR database/Web Server and OBRC
Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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Find More Resources from PubMed Articles
CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using
R-Shiny
.
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Journal:
BMC Bioinformatics. 2024 Apr 02;25(1)
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shinyMBA: a novel
R shiny
application for quality control of the multiplex bead assay for serosurveillance studies.
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Journal:
Sci Rep. 2024 Mar 28;14(1)
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LFSPROShiny: An Interactive
R/Shiny
App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations.
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JCO Clin Cancer Inform. 2024 Feb;8
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Multivariate pattern analysis: a method and software to reveal, quantify, and visualize predictive association patterns in multicollinear data.
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BMC Bioinformatics. 2024 Jan 31;25(1)
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GatekeepR: an
R Shiny
application for the identification of nodes with high dynamic impact in Boolean networks.
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Bioinformatics. 2024 Jan 02;40(1)
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PlantC2U: deep learning of cross-species sequence landscapes predicts plastid C-to-U RNA editing in plants.
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Journal:
J Exp Bot. 2024 Apr 15;75(8)
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An interactive tool for designing efficient toxicology experiments.
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Arch Toxicol. 2024 Mar;98(3)
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Improving pharmacometrics analysis efficiency using DataCheQC: An interactive, Shiny-based app for quality control of pharmacometrics datasets.
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Journal:
CPT Pharmacometrics Syst Pharmacol. 2023 Oct;12(10)
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cyjShiny: A cytoscape.js
R Shiny
Widget for network visualization and analysis.
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Journal:
PLoS One. 2023;18(8)
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NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis.
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Journal:
Bioinformatics. 2023 Aug 01;39(8)
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