Results
1
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10
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311
Databases/Tools
NAR database/Web Server and OBRC
CRISPRcompar -- a website to compare clustered regularly interspaced short palindromic repeats
Automatically recovers from CRISPRdb all members of a genus containing a CRISPR and compares them.
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eRNAbase: a comprehensive database for decoding the regulatory eRNAs in human and mouse.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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CRISPRFinder -- A web tool to identify clustered regularly interspaced short palindromic repeats
Extract with precision and further analyze CRISPRs from genomic sequences.
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dbAPIS: a database of anti-prokaryotic immune system genes.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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SLKB: synthetic lethality knowledge base.
Nucleic Acids Res. 2024 Jan 05;52(D1)
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DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts.
Nucleic Acids Res. 2023 Jul 05;51(W1)
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CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing.
Nucleic Acids Res. 2023 Jul 05;51(W1)
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TransCRISPR-sgRNA design tool for CRISPR/Cas9 experiments targeting specific sequence motifs.
Nucleic Acids Res. 2023 Jul 05;51(W1)
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GPSAdb: a comprehensive web resource for interactive exploration of genetic perturbation RNA-seq datasets.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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PICKLES v3: the updated database of pooled in vitro CRISPR knockout library essentiality screens.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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Annotation and evaluation of base editing outcomes in multiple cell types using CRISPRbase.
Nucleic Acids Res. 2023 Jan 06;51(D1)
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CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictions.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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Identification of genome edited cells using CRISPRnano.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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PADLOC: a web server for the identification of antiviral defence systems in microbial genomes.
Nucleic Acids Res. 2022 Jul 05;50(W1)
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LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system.
Nucleic Acids Res. 2022 Jan 07;50(D1)
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CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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pegIT - a web-based design tool for prime editing.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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SynLeGG: analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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PE-Designer and PE-Analyzer: web-based design and analysis tools for CRISPR prime editing.
Nucleic Acids Res. 2021 Jul 02;49(W1)
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Open Targets Platform: supporting systematic drug-target identification and prioritisation.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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iCSDB: an integrated database of CRISPR screens.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CNCDatabase: a database of non-coding cancer drivers.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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dbGuide: a database of functionally validated guide RNAs for genome editing in human and mouse cells.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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CRISP-view: a database of functional genetic screens spanning multiple phenotypes.
Nucleic Acids Res. 2021 Jan 08;49(D1)
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PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins.
Nucleic Acids Res. 2020 Jul 02;48(W1)
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AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses.
Nucleic Acids Res. 2020 Jul 02;48(W1)
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Prediction of synonymous corrections by the BE-FF computational tool expands the targeting scope of base editing.
Nucleic Acids Res. 2020 Jul 02;48(W1)
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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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PADS Arsenal: a database of prokaryotic defense systems related genes.
Nucleic Acids Res. 2020 Jan 08;48(D1)
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The Gene Sculpt Suite: a set of tools for genome editing.
Nucleic Acids Res. 2019 Jul 02;47(W1)
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CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing.
Nucleic Acids Res. 2019 Jul 02;47(W1)
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The BioGRID interaction database: 2019 update.
Nucleic Acids Res. 2019 Jan 08;47(D1)
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The UCSC Genome Browser database: 2019 update.
Nucleic Acids Res. 2019 Jan 08;47(D1)
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SEdb: a comprehensive human super-enhancer database.
Nucleic Acids Res. 2019 Jan 08;47(D1)
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CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs.
Nucleic Acids Res. 2019 Jan 08;47(D1)
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens.
Nucleic Acids Res. 2018 Jul 02;46(W1)
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The UCSC Genome Browser database: 2018 update.
Nucleic Acids Res. 2018 Jan 04;46(D1)
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PICKLES: the database of pooled in-vitro CRISPR knockout library essentiality screens.
Nucleic Acids Res. 2018 Jan 04;46(D1)
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Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Nucleic Acids Res. 2018 Jan 04;46(D1)
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Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins.
Nucleic Acids Res. 2018 Jan 04;46(D1)
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FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update.
Nucleic Acids Res. 2017 Jan 04;45(D1)
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The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching.
Nucleic Acids Res. 2017 Jan 04;45(D1)
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Ensembl 2017.
Nucleic Acids Res. 2017 Jan 04;45(D1)
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GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens.
Nucleic Acids Res. 2017 Jan 04;45(D1)
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Editorial: Nucleic Acids Research annual Web Server Issue in 2016.
Nucleic Acids Res. 2016 Jul 08;44(W1)
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CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.
Nucleic Acids Res. 2016 Jul 08;44(W1)
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Breaking-Cas-interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes.
Nucleic Acids Res. 2016 Jul 08;44(W1)
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SEA: a super-enhancer archive.
Nucleic Acids Res. 2016 Jan 04;44(D1)
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CRISPRz: a database of zebrafish validated sgRNAs.
Nucleic Acids Res. 2016 Jan 04;44(D1)
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Find More Resources from PubMed Articles
CrnnCrispr: An Interpretable Deep Learning Method for
CRISPR
/Cas9 sgRNA On-Target Activity Prediction.
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Journal:
Int J Mol Sci. 2024 Apr 17;25(8)
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Real-World Outcomes of Patients with Advanced Epidermal Growth Factor Receptor-Mutated Non-Small Cell Lung Cancer in Canada Using Data Extracted by Large Language Model-Based Artificial Intelligence.
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Curr Oncol. 2024 Apr 02;31(4)
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Rapid multiple protein sequence search by parallel and heterogeneous computation.
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Bioinformatics. 2024 Mar 29;40(4)
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TemStaPro: protein thermostability prediction using sequence representations from protein language models.
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Bioinformatics. 2024 Mar 29;40(4)
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CRISPR
-M: Predicting sgRNA off-target effect using a multi-view deep learning network.
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PLoS Comput Biol. 2024 Mar;20(3)
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Advanced Technologies in Radiation Research.
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Radiat Res. 2024 Apr 01;201(4)
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Finding identical sequence repeats in multiple protein sequences: An algorithm.
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J Biosci. 2024;49
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Comparing robotic and manual injection methods in zebrafish embryos for high-throughput RNA silencing using
CRISPR
-RfxCas13d.
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Biotechniques. 2024 May;76(5)
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CRISPR
-DIPOFF: an interpretable deep learning approach for
CRISPR
Cas-9 off-target prediction.
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Brief Bioinform. 2024 Jan 22;25(2)
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Accurate top protein variant discovery via low-N pick-and-validate machine learning.
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Cell Syst. 2024 Feb 21;15(2)
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(13)
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