Results 1-10 of about 899
- Databases/Tools
NAR database/Web Server and OBRC
- The PredictProtein server
Predict protein structure and function based on protein sequence.
Find Articles Citing this Tool: - MODOMICS: a database of RNA modifications and related information. 2023 update.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - The MPI Bioinformatics Toolkit for protein sequence analysis
Conduct protein sequence and structure analysis using a suite of software tools.
Find Articles Citing this Tool: - ATLAS: protein flexibility description from atomistic molecular dynamics simulations.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - DOMAC -- a hybrid protein domain prediction server
An accurate protein domain prediction server.
Find Articles Citing this Tool: [Show More] - JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - Integrated databanks access and sequence/structure analysis services at the PBIL
Find Articles Citing this Tool: - OpenProt 2.0 builds a path to the functional characterization of alternative proteins.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - CEP -- a conformational epitope prediction server
Find Articles Citing this Tool: - AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - GDAP -- A Web Tool for Genome-wide Protein Disulfide Bond Prediction
Find Articles Citing this Tool: - DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - The Yeast Resource Center Public Data Repository
Find Articles Citing this Tool: - DisProt in 2024: improving function annotation of intrinsically disordered proteins.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - Protein structure prediction servers at University College London
Find Articles Citing this Tool: - A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - EVA -- evaluation of protein structure prediction servers
Find Articles Citing this Tool: - SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - PROTEUS2 -- a web server for comprehensive protein structure prediction and structure-based annotation
Find Articles Citing this Tool: - dbAPIS: a database of anti-prokaryotic immune system genes.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - PROSPECT-PSPP -- An automatic computational pipeline for protein structure prediction
Find Articles Citing this Tool: - HumanLectome, an update of UniLectin for the annotation and prediction of human lectins.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - Pcons.net -- protein structure prediction meta server
Find Articles Citing this Tool: - VarEPS-Influ:an risk evaluation system of occurred and virtual variations of influenza virus genomes.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - Robetta Server -- Protein structure prediction and analysis
Find Articles Citing this Tool: - NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - META-PP -- single interface to crucial prediction servers
Find Articles Citing this Tool: - cfOmics: a cell-free multi-Omics database for diseases.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - PROTINFO -- new algorithms for enhanced protein structure predictions
Find Articles Citing this Tool: - BioLiP2: an updated structure database for biologically relevant ligand-protein interactions.
Nucleic Acids Res. 2024 Jan 05;52(D1)
Find Articles Citing this Tool: - GeneSilico protein structure prediction meta-server
Find Articles Citing this Tool: - CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - SAM-T08 -- HMM-based Protein Structure Prediction
Find Articles Citing this Tool: - SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - BCM Search Launcher
Find Articles Citing this Tool: - nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - VADAR -- a web server for quantitative evaluation of protein structure quality
Find Articles Citing this Tool: - PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - PROMALS3D -- web server for accurate multiple protein sequence and structure alignments
Find Articles Citing this Tool: - GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - (PS)2 -- Protein Structure Prediction Server
Find Articles Citing this Tool: - ACFIS 2.0: an improved web-server for fragment-based drug discovery via a dynamic screening strategy.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - 3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes
Find Articles Citing this Tool: - αCharges: partial atomic charges for AlphaFold structures in high quality.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - Decoys 'R' Us
Find Articles Citing this Tool: - PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - ESPript/ENDscript -- extracting and rendering sequence and 3D information from atomic structures of proteins
Find Articles Citing this Tool: - PrismNet: predicting protein-RNA interaction using in vivo RNA structural information.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - I-TASSER: Protein Structure & Function Predictions
Find Articles Citing this Tool: - PASSer: fast and accurate prediction of protein allosteric sites.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - BPROMPT -- a consensus server for membrane protein prediction
Find Articles Citing this Tool: - Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - NCI -- a server to identify non-canonical interactions in protein structures
Find Articles Citing this Tool: - DeepAlloDriver: a deep learning-based strategy to predict cancer driver mutations.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - The Jpred 3 secondary structure prediction server
Find Articles Citing this Tool: - FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.
Nucleic Acids Res. 2023 Jul 05;51(W1)
Find Articles Citing this Tool: - PPT-DB -- the Protein property Prediction and Testing DataBase
Find Articles Citing this Tool: - The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis
Find Articles Citing this Tool: - The conserved domain database in 2023.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - PRALINE -- a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
Find Articles Citing this Tool: - RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - DSSPcont -- continuous secondary structure assignments for proteins
Find Articles Citing this Tool: - MobiDB: 10 years of intrinsically disordered proteins.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - SCRATCH -- a protein structure and structural feature prediction server
Find Articles Citing this Tool: - TOXRIC: a comprehensive database of toxicological data and benchmarks.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - The HHpred interactive server for protein homology detection and structure prediction
Find Articles Citing this Tool: - MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - ProTarget -- automatic prediction of protein structure novelty
Find Articles Citing this Tool: - MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - PatchDock and SymmDock -- servers for rigid and symmetric docking
Find Articles Citing this Tool: - The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - Geno3D -- Protein Modeling Tool
Find Articles Citing this Tool: - CAMPR4: a database of natural and synthetic antimicrobial peptides.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - GTOP -- Genomes to Protein structures and functions database
Find Articles Citing this Tool: - InterPro in 2022.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - Tools for comparative protein structure modeling and analysis
Find Articles Citing this Tool: - NLRscape: an atlas of plant NLR proteins.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - Scooby-domain -- prediction of globular domains in protein sequence
Find Articles Citing this Tool: - LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - GlobPlot -- exploring protein sequences for globularity and disorder
Find Articles Citing this Tool: - Ensembl 2023.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - COMPASS server for remote homology inference
Find Articles Citing this Tool: - TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - PRED-TMBB -- A Web Server for Predicting the Topology of xdf-barrel Outer Membrane Proteins
Find Articles Citing this Tool: - RiboXYZ: a comprehensive database for visualizing and analyzing ribosome structures.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - SWISS-MODEL -- an automated protein homology-modeling server
Find Articles Citing this Tool: - PROTAC-DB 2.0: an updated database of PROTACs.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - PONGO -- a web server for multiple predictions of all-alpha transmembrane proteins
Find Articles Citing this Tool: - The protein common assembly database (ProtCAD)-a comprehensive structural resource of protein complexes.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - EVAcon -- a protein contact prediction evaluation service
Find Articles Citing this Tool: - HProteome-BSite: predicted binding sites and ligands in human 3D proteome.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - PEP-FOLD -- De Novo Peptide Structure Prediction
Find Articles Citing this Tool: - PAT: a comprehensive database of prokaryotic antimicrobial toxins.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - TRAMPLE -- the transmembrane protein labeling environment
Find Articles Citing this Tool: - AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - Localizome -- a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information
Find Articles Citing this Tool: - snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - TMHMM Server v. 2.0 -- Prediction of transmembrane helices in proteins
Find Articles Citing this Tool: - GAIA: G-quadruplexes in alive creature database.
Nucleic Acids Res. 2023 Jan 06;51(D1)
Find Articles Citing this Tool: - NNcon -- Protein Contact Map Prediction Using Artificial Neural Networks
Find Articles Citing this Tool: - NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - SAHG -- Structural Atlas of the Human Genome
Find Articles Citing this Tool: - AllerCatPro 2.0: a web server for predicting protein allergenicity potential.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - SPROUTS -- Structural Prediction for Protein Folding Utility System
Find Articles Citing this Tool: - PRECOGx: exploring GPCR signaling mechanisms with deep protein representations.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - QMEAN -- Server for Model Quality Estimation
Find Articles Citing this Tool: - FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid-liquid phase separation and aggregation of proteins.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - TMBETA-NET -- discrimination and prediction of membrane spanning xdf-strands in outer membrane proteins
Find Articles Citing this Tool: - CSM-Potential: mapping protein interactions and biological ligands in 3D space using geometric deep learning.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - PEDANT -- Protein Extraction, Description and ANalysis Tool
Find Articles Citing this Tool: - PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - RPBS -- a web resource for structural bioinformatics
Find Articles Citing this Tool: - AlphaKnot: server to analyze entanglement in structures predicted by AlphaFold methods.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - PAT -- a protein analysis toolkit for integrated biocomputing on the web
Find Articles Citing this Tool: - CATANA: an online modelling environment for proteins and nucleic acid nanostructures.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - 2Dsweep -- protein annotation by secondary structure elements
Find Articles Citing this Tool: - BeStSel: webserver for secondary structure and fold prediction for protein CD spectroscopy.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - BOMP -- A Program to Predict Integral xdf-barrel Outer Membrane Proteins Encoded within Genomes of Gram-negative Bacteria
Find Articles Citing this Tool: - DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - transFold -- a web server for predicting the structure and residue contacts of transmembrane beta-barrels
Find Articles Citing this Tool: - GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - Prediction of Coiled Coil Regions
Find Articles Citing this Tool: - DDGun: an untrained predictor of protein stability changes upon amino acid variants.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - wwLigCSRre -- Ligand-based Screening server
Find Articles Citing this Tool: - iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - BhairPred -- prediction of xdf-hairpins in a protein from multiple alignment information using ANN and SVM techniques
Find Articles Citing this Tool: - ProteinsPlus: a comprehensive collection of web-based molecular modeling tools.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - BioInfo3D -- A suite of tools for structural bioinformatics
Find Articles Citing this Tool: - LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - SuperSite -- Ligand Binding Site Database
Find Articles Citing this Tool: - 3DLigandSite: structure-based prediction of protein-ligand binding sites.
Nucleic Acids Res. 2022 Jul 05;50(W1)
Find Articles Citing this Tool: - BCM Search Launcher -- Nucleic Acid Search tool
Find Articles Citing this Tool: - JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - MegaMotifBase -- a database of structural motifs in protein families and superfamilies
Find Articles Citing this Tool: - dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - FoldMiner and LOCK 2 -- Protein structure comparison and motif discovery on the web
Find Articles Citing this Tool: - ProteomicsDB: toward a FAIR open-source resource for life-science research.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - NetCSSP -- Neural networks for calculating Contact-dependent Secondary Structure Propensity
Find Articles Citing this Tool: - AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - TOPCONS -- Membrane protein TOPology CONSensus prediction
Find Articles Citing this Tool: - SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - Phospho3D -- a database of three-dimensional structures of protein phosphorylation sites
Find Articles Citing this Tool: - PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool:
Find Articles Citing this Tool:- RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - PIGS -- Prediction of ImmunoGlobulin Structure
Find Articles Citing this Tool: - VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - dbPTM -- an information repository of protein post-translational modification
Find Articles Citing this Tool: - ProNAB: database for binding affinities of protein-nucleic acid complexes and their mutants.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - The Structure Superposition Database
Find Articles Citing this Tool: - GRAND: a database of gene regulatory network models across human conditions.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - Berkeley Phylogenomics Group
Find Articles Citing this Tool: - DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides.
Nucleic Acids Res. 2022 Jan 07;50(D1)
Find Articles Citing this Tool: - EXPASY Proteome Tools Collection
Find Articles Citing this Tool: - CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - TMBETA-GENOME -- database for annotated xdf-barrel membrane proteins in genomic sequences
Find Articles Citing this Tool: - b2bTools: online predictions for protein biophysical features and their conservation.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - ArchPRED -- a template based loop structure prediction server
Find Articles Citing this Tool: - GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - Spritz -- a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines
Find Articles Citing this Tool: - ProteinTools: a toolkit to analyze protein structures.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - InterProScan -- protein domains identifier
Find Articles Citing this Tool: - ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - DISULFIND -- a disulfide bonding state and cysteine connectivity prediction server
Find Articles Citing this Tool: - DeepRefiner: high-accuracy protein structure refinement by deep network calibration.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - firestar -- prediction of functionally important residues using structural templates and alignment reliability
Find Articles Citing this Tool: - PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - FOLD-RATE -- prediction of protein folding rates from amino acid sequence
Find Articles Citing this Tool: - InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - ProteinCCD -- Protein Crystallographic Construct Design
Find Articles Citing this Tool: - ModFOLD8: accurate global and local quality estimates for 3D protein models.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - OnD-CRF -- Order and Disorder in proteins using Conditional Random Fields
Find Articles Citing this Tool: - Proteo3Dnet: a web server for the integration of structural information with interactomics data.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - ProSA-web -- Protein Structure Analysis
Find Articles Citing this Tool: - IPC 2.0: prediction of isoelectric point and pKa dissociation constants.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - The SBASE domain sequence library -- Domain architecture prediction
Find Articles Citing this Tool: - VirtualTaste: a web server for the prediction of organoleptic properties of chemical compounds.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - DiANNA -- unified software for Cysteine state, Disulfide Bond partner prediction and ternary cysteine classification
Find Articles Citing this Tool: - Recognizing and validating ligands with CheckMyBlob.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - NetPhos 2.0 -- Phosphorylation sites predictions
Find Articles Citing this Tool: - mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions.
Nucleic Acids Res. 2021 Jul 02;49(W1)
Find Articles Citing this Tool: - CAMPO, SCR_FIND and CHC_FIND -- a suite of web tools for computational structural biology
Find Articles Citing this Tool: - PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - ProFunc -- a server for predicting protein function from 3D structure
Find Articles Citing this Tool: - MarkerDB: an online database of molecular biomarkers.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - VKCDB -- voltage-gated potassium channel database
Find Articles Citing this Tool: - MoonProt 3.0: an update of the moonlighting proteins database.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - PDB_TM -- selection and membrane localization of transmembrane proteins in the protein data bank
Find Articles Citing this Tool: - MobiDB: intrinsically disordered proteins in 2021.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - IBIS -- Inferred Biomolecular Interaction Server
Find Articles Citing this Tool: - CATH: increased structural coverage of functional space.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - Phobius -- A combined transmembrane topology and signal peptide predictor
Find Articles Citing this Tool: - The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - TOPDOM -- Conservatively Located Domains and Motifs in Transmembrane Proteins
Find Articles Citing this Tool: - BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - AutoPSI -- Automated Protein Structure Identification
Find Articles Citing this Tool: - LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - PASS2 -- an automated database of Protein Alignments Organized as Structural Superfamilies
Find Articles Citing this Tool: - The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - RNABindR -- software for prediction of RNA binding residues in proteins
Find Articles Citing this Tool: - DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - PRISM -- protein interactions by structural matching
Find Articles Citing this Tool: - ThermoMutDB: a thermodynamic database for missense mutations.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - PROMALS web server for accurate multiple protein sequence alignments
Find Articles Citing this Tool: - The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.
Nucleic Acids Res. 2021 Jan 08;49(D1)
Find Articles Citing this Tool: - MODBASE -- 3D Protein Models Database
Find Articles Citing this Tool: - RNAProbe: a web server for normalization and analysis of RNA structure probing data.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - UCSC Genome Browser
Find Articles Citing this Tool: - HomolWat: a web server tool to incorporate 'homologous' water molecules into GPCR structures.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - AUGUSTUS -- ab initio prediction of alternative transcripts
Find Articles Citing this Tool: - mCSM-membrane: predicting the effects of mutations on transmembrane proteins.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - REPPER x97- repeats and their periodicities in fibrous proteins
Find Articles Citing this Tool: - 3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - CASTp -- computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
Find Articles Citing this Tool: - PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - NRSAS -- Nuclear Receptor Structure Analysis Servers
Find Articles Citing this Tool: - EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - PAR-3D -- Protein Active site Residue - 3D structural motif
Find Articles Citing this Tool: - AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - I-Mutant 2.0 -- predicting stability changes upon mutation from the protein sequence or structure
Find Articles Citing this Tool: - PDBMD2CD: providing predicted protein circular dichroism spectra from multiple molecular dynamics-generated protein structures.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - Protemot -- prediction of protein binding sites with automatically extracted geometrical templates
Find Articles Citing this Tool: - MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - FRODOCK -- Fast Rotational DOCKing tool
Find Articles Citing this Tool: - ProteinsPlus: interactive analysis of protein-ligand binding interfaces.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - POODLE-L -- Prediction Of Order and Disorder by machine LEarning
Find Articles Citing this Tool: - SuperCYPsPred-a web server for the prediction of cytochrome activity.
Nucleic Acids Res. 2020 Jul 02;48(W1)
Find Articles Citing this Tool: - SuperLooper -- Loop Structure Predictor
Find Articles Citing this Tool: - Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res. 2020 Jan 08;48(D1)
Find Articles Citing this Tool: - PhosPhAt -- The Arabidopsis Protein Phosphorylation Site Database
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Nucleic Acids Res. 2018 Jan 04;46(D1)
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Nucleic Acids Res. 2018 Jan 04;46(D1)
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Nucleic Acids Res. 2017 Jul 03;45(W1)
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Nucleic Acids Res. 2017 Jan 04;45(D1)
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Nucleic Acids Res. 2017 Jan 04;45(D1)
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