Results 1-10 of about 249
- Protocol for preparing formalin-fixed paraffin-embedded musculoskeletal tissue samples from mice for spatial transcripto... new window
Date: 2024-03-29 Authors: Wehrle E, Günther D, Mathavan N, Singh A, Müller R. Journal: STAR protocols - TISSUE: uncertainty-calibrated prediction of single-cell spatialtranscriptomics improves downstream analyses new windowWhole-transcriptome spatial profiling of genes at single-cell resolution remains a challenge. To address this limitation, spatial gene expression prediction methods have been developed to infer the spatial expression of unmeasured transcripts, but
Date: (2024) Authors: Eric D. Sun , Rong Ma , Paloma Navarro Negredo , Anne Brunet , James Zou - Single-cell RNA sequencing comparison of the human metastatic prostate spine tumor microenvironment. new window
Date: 2024-02-10 Authors: Nguyen AD, Haines C, Price MJ, Dalton TE, Baëta CD, Hockenberry HA, Goodwin CR. Journal: STAR protocols - Spatial clustering, which shares an analogy with single-cell clustering, has expanded the scope of tissue physiology studies from cell-centroid to structure-centroid with spatially resolved transcriptomics (SRT) data. Computational methods have
Date: (2024) Authors: Zhiyuan Yuan , Fangyuan Zhao , Senlin Lin , Yu Zhao ... Yi Zhao - Protocol for optimized dissociation of human scalp tissue for hair follicle transcriptomics by scRNA-seq. new window
Date: 2024-02-05 Authors: Yuan Z, Chen J, Xu Y, Zhou Z, Cai P, Wei X, Zheng H, Zhang J, Yuan Y, Liu C. Journal: STAR protocols - Spatial landmarks are crucial in describing histological features between samples or sites, tracking regions of interest in microscopy, and registering tissue samples within a common coordinate framework. Although other studies have explored
Date: (2024) Authors: Markus Ekvall , Ludvig Bergenstråhle , Alma Andersson , Paulo Czarnewski ... Joakim Lundeberg Date: 2024-01-26 Authors: Jiang Y, Li Y, Cheng M, Xu J, Wei X, Liu C. Journal: STAR protocols - The central nervous system (CNS) contains a diverse number of neuronal and non-neuronal cell types that physically interact with one another. It is these physical interactions which underlie many essential functions. For example, neurons communicate
Date: (2024) Authors: Francisco Pestana , T. Grant Belgard , Thierry Voet , Matthew G. Holt Ref: New Technologies for Glutamate Interaction Date: 2024-01-01 Authors: Perez MW, Camplisson CK, Beliveau BJ. Journal: Methods in molecular biology (Clifton, N.J.) Date: 2023-11-04 Authors: Gao J, Hu K, Zhang F, Cui X. Journal: Methods (San Diego, Calif.)